AT1G74280.1
with_OMAT_gene
0.54840699999999997782
<html><body><title>AT1G74280.1</title>(↑ Click "Links", if this line appears at the beginning.)<br><H1>Other supporting information</H1><table><tr><td colspan="2" align="left"><b>Gene Model</b><br></td></tr><tr><td NOWRAP width="75"></td><td NOWRAP><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u127428001000i/AT1G74280.1.gene_models.png" width="717"><br></td></tr><tr><td colspan=2 align="left"><b>Correlation Plot</b><br></td></tr><tr><td NOWRAP colspan="2" align="left"><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u127428001000i/AT1G74280.1.CorrPlot.jpg" width="800"><br><br></td></tr></table><hr><b>Expression profile (Values are plotted in Log(2) values.)</b><br><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u127428001000i/AT1G74280.1.F0.Expression.png"><br><hr><b>Genes with related expresssion profiles.</b><br><table border=1><tr><th colspan=7 align="left">Positively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u524579001000i">AT5G45790.1</a></td><td>0.866798</td><td>ubiquitin thiolesterase</td><td>OMAT5P012840</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u125468001000i">AT1G54680.1</a></td><td>0.855544</td><td>unknown protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u221145001000i">AT2G11450.1</a></td><td>0.852963</td><td>transposable element gene</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u325591001000i">AT3G55910.1</a></td><td>0.847738</td><td>unknown protein</td><td>OMAT3P015510</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u322229001000i">AT3G22290.1</a></td><td>0.847696</td><td>unknown protein</td><td>OMAT3P008390</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u590000041000i">ath-MIR399c</a></td><td>0.844069</td><td>ath-MIR399c</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u526216201000i">AT5G62162.1</a></td><td>0.844069</td><td>MIR399C</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u322318001000i">AT3G23180.1</a></td><td>0.843683</td><td>FUNCTIONS IN: molecular_function unknown</td><td>OMAT3P008760</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u522862201000i">AT5G28622.1</a></td><td>0.834381</td><td>transposable element gene</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u128097001000i">AT1G80970.1</a></td><td>0.825012</td><td>XH domain-containing protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><th colspan=7 align="left">Negatively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u521752001000i">AT5G17520.1</a></td><td>-0.894855</td><td>RCP1 (ROOT CAP 1)</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u421280001000i">AT4G12800.1</a></td><td>-0.810709</td><td>PSAL (photosystem I subunit L)</td><td>OMAT4P003310</td><td>-</td><td>OMAT4P102700</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u122991001000i">AT1G29910.1</a></td><td>-0.807503</td><td>CAB3 (CHLOROPHYLL A/B BINDING PROTEIN 3)</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u120368001000i">AT1G03680.1</a></td><td>-0.800776</td><td>ATHM1</td><td>OMAT1P100820</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u126152001000i">AT1G61520.1</a></td><td>-0.800238</td><td>LHCA3</td><td>OMAT1P016710</td><td>-</td><td>OMAT1P114900</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u126415001000i">AT1G64150.1</a></td><td>-0.798933</td><td>unknown protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u120838001000i">AT1G08380.1</a></td><td>-0.79579</td><td>PSAO (photosystem I subunit O)</td><td>OMAT1P102600</td><td>-</td><td>OMAT1P002740</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u525833001000i">AT5G58330.1</a></td><td>-0.793893</td><td>malate dehydrogenase (NADP), chloroplast, putative</td><td>OMAT5P115400</td><td>-</td><td>OMAT5P017620,OMAT5P017630</td><td>[OMAT5P017620]-, [OMAT5P017630]-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u421034001000i">AT4G10340.1</a></td><td>-0.791445</td><td>LHCB5 (LIGHT HARVESTING COMPLEX OF PHOTOSYSTEM II 5)</td><td>OMAT4P002520</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u526657001000i">AT5G66570.1</a></td><td>-0.79021</td><td>PSBO1 (PS II OXYGEN-EVOLVING COMPLEX 1)</td><td>OMAT5P020640</td><td>-</td><td>OMAT5P118360</td><td>-</td></tr></table><br><a href="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u127428001000i/AT1G74280.1-correlation.txt">Get whole results</a><br><br> <HR><b>Over-Representation Analysis Result</b><br><br><table border="1"><tr bgcolor=#FF69B4><td></td><td><i>p</i>-value</td><td> <= 1.00e-06</td><td>:20 terms with high significance</td></a></tr><tr bgcolor=#FFFACD><td>1.00e-06 < </td><td><i>p</i>-value</td><td> <= 8.76e-06</td><td> :With considering multiple testing correction;<br><i>p</i> <= 1.00e-02 / 1142</td></tr><tr bgcolor=#FFFFFF><td>8.76e-06 < </td><td><i>p</i>-value</td><td> <= 1.00e-02</td><td></td></tr></table><br><table border="1"><tr><th>Type of term (*1)</th><th>Depth of the term in ontology tree</th><th>ID/Term</th><th>Description</th><th>Number of genes</th><th>Over-Representative rate (*2)</th><th><i>p</i>-value (*3)</th><th>PosMed <i>p</i>-value (*4)<br> (Link to PosMed)</th><th>Found on gene annotation</th></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>cellular_component</td><td>-</td><td>65/200</td><td>1.33</td><td>3.56e-03</td><td>-</td><td>no</td></tr></table><table><tr><td valign=top>(*1)</td><td>[KW]:words found in gene description.</td></tr><tr><td valign=top>(*2)</td><td>([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) </td></tr><tr><td valign=top>(*3)</td><td>P-values were calculated on hypergeometric distribution in which we found <i>n</i> genes with a annotation term during 200 highly correlated genes, while we had <i>N</i> genes with the term in the whole genes.</td></tr><tr><td valign=top>(*4)</td><td><a href="http://omicspace.riken.jp/PosMed-plus/">PosMed</a> is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.</td></tr></table><hr><a href="/db/SciNetS_ria227i/cria227s904i">Top Page</a></body></html>